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README.md
README.md
 
 
addReadMetrics.pl.md
addReadMetrics.pl.md
 
 
assembleAll.pl.md
assembleAll.pl.md
 
 
baseBalance.pl.md
baseBalance.pl.md
 
 
emailWhoever.pl.md
emailWhoever.pl.md
 
 
guessTaxon.pl.md
guessTaxon.pl.md
 
 
sn_SalmID.pl.md
sn_SalmID.pl.md
 
 
sn_assembleAll_reference.pl.md
sn_assembleAll_reference.pl.md
 
 
sn_assemblyWorkflow_init.pl.md
sn_assemblyWorkflow_init.pl.md
 
 
sn_cleanup.pl.md
sn_cleanup.pl.md
 
 
sn_crypto_assembleAll.pl.md
sn_crypto_assembleAll.pl.md
 
 
sn_crypto_gp60.pl.md
sn_crypto_gp60.pl.md
 
 
sn_detectContamination-kraken.pl.md
sn_detectContamination-kraken.pl.md
 
 
sn_detectContamination-mlst.pl.md
sn_detectContamination-mlst.pl.md
 
 
sn_detectContamination.pl.md
sn_detectContamination.pl.md
 
 
sn_genotype.pl.md
sn_genotype.pl.md
 
 
sn_genotype_escherichia.pl.md
sn_genotype_escherichia.pl.md
 
 
sn_helloWorld.pl.md
sn_helloWorld.pl.md
 
 
sn_helloWorld.py.md
sn_helloWorld.py.md
 
 
sn_helloWorld.sh.md
sn_helloWorld.sh.md
 
 
sn_immediateStatus.pl.md
sn_immediateStatus.pl.md
 
 
sn_iontorrent_assembleAll.pl.md
sn_iontorrent_assembleAll.pl.md
 
 
sn_iontorrent_parseSampleSheet.pl.md
sn_iontorrent_parseSampleSheet.pl.md
 
 
sn_kraken-metagenomics.pl.md
sn_kraken-metagenomics.pl.md
 
 
sn_kraken.pl.md
sn_kraken.pl.md
 
 
sn_mlst-wg.pl.md
sn_mlst-wg.pl.md
 
 
sn_mlst.pl.md
sn_mlst.pl.md
 
 
sn_parseSampleSheet.pl.md
sn_parseSampleSheet.pl.md
 
 
sn_passfail.pl.md
sn_passfail.pl.md
 
 
sn_report.pl.md
sn_report.pl.md
 
 
sn_sarscov2_assembleAll.pl.md
sn_sarscov2_assembleAll.pl.md
 
 
sn_saveFailedGenomes.pl.md
sn_saveFailedGenomes.pl.md
 
 
sn_staramr.pl.md
sn_staramr.pl.md
 
 
transferFilesToRemoteComputers.pl.md
transferFilesToRemoteComputers.pl.md
 
 

README.md

Please view the whole readme in the main directory in README.md