General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics

Spatially Explicit Integrated Modeling System --- open-source, cross-platform, and high performance computation

A unified interface for simulations of the Bio-Energetic model on food webs

📦 R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)

An R package for simulating Generalised Management Strategy Evaluation

A comprehensive computational biophysics simulation suite consisting of various ecological interactions between microorganisms of different characteristics in varying environments. We plan to expand this into a complete biophysics education interface for anyone interested in an interdisciplinary approach to simulations in ecological sciences.

An educational tool for understanding ecological models of population dynamics

Population genetic model of polygynous biparental inbreeding with no polyandry

APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab

Data used in: "Estudo da distribuição do gênero chamaeza no estado do Rio de Janeiro"

Updated R code for Nunes & Pearson, 2017 in Journal of Biogeography. Nunes, L. A. and Pearson, R. G. (2017), A null biogeographical test for assessing ecological niche evolution. Journal of Biogeography. doi: 10.1111/jbi.12910

Code for 'Finding missing links in interaction networks' paper

Data Analysis with R

Probability applied to genetics and ecology

Supplemental code for the paper: "Seed dispersal as a search strategy: dynamic and fragmented landscapes select for multi-scale movement strategies in plants" in Movement Ecology 2021

Large-scale implementation (using the Split-Apply-Combine paradigm) of different metabolic adaptation models of species in a 2-species co-culture, based on a Consumer-Resource modeling framework in a Serial-Dilution setup, where species compete for nutrients that are supplied periodically.

Afit software for the analysis of fitness and invasiviness of Aphid insects

A Literature Review of Questionable Research Practices in Ecological Modelling for Decisions

System to simulate individual interactions and capture ecological and evolutionary dynamics