Tags: lskatz/fasten
Tags
Fasten metrics bug fix (#46) * f64 * fixed phred score * fixed test for phred score * updated answers for corrected phred scores * benchmark_metrics * benchmark_metrics * docs and some new gitignore * speed up fasten_metrics; make very large file for metrics benchmark * make large test file larger
Fasten head (#44) * refactor fasten-head * stop reformatting the paper on side branches * stop reformatting the paper on side branches * benchmark viz * m * mm * v4 * pyqt * tests with png artifacts * m * fail-fast * bash -x * don't make large files many times * just do 100x in benchmark * just do 100x in benchmark * m * multiplier-10x * bbmap installation * seqfu * fastx toolkit * jellyfish * artif * artifact name * artifact name * trying to parallelize using vibe coding * aggregator step * make an image of images * make an image of images * 3.10 * fix cargo warnings? and also simplify artifacts * fix cargo warnings? and also simplify artifacts * pass files through artifacts * remove mamba; add caching * m * mamba=>conda * cache on a single job * recover path * m * conditional build cache * conditional build cache * add back in conda setup step * conda-remove-defaults * bash -el * fix? conda caching * use gpt to fix conda cache * take away the if * remove key that produced warning
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