Organelle Genome %

[nataliagru1]

Hello,

I am hoping to get a better understanding of the output metric called Organelle Genome %. I couldn't find anything about this metric in the available documentation or publications.

For some of the putative mitochondrial genomes inferred using Novoplasty, some of the output logs report Organelle Genome %, while others do not. Please see 2 output log files for an example.

Additionally, is it possible to write an explanation of output metrics, similar to "Explanation parameters"?

Please let me know and thank you for your time and consideration.

log_DTG_SG_196_hyena.txt
log_DTG_SG_197_hyena.txt

[ndierckx]

Hi,

Sorry was moving countries when you send me this, so just saw this now..

If still interested, Organelle Genome % are the percentage of reads that originate from the mitochondrial genome, but only given if the assembly is circularized