Skip to content

Pull requests: nf-core/scrnaseq

New pull request New
11 Open 292 Closed
11 Open 292 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Use genome config for prebuilt indexes
#544 opened May 14, 2026 by Eldergenix Loading…
7 of 10 tasks
Fix barcode usage
#543 opened May 12, 2026 by nictru Contributor Loading…
1
Fix remaining linting warnings
#542 opened May 12, 2026 by nictru Contributor Loading…
3
feat(cellranger/count): support SRA three-file FASTQ inputs (_1/_2/_3) in renaming logic enhancement New feature or request
#532 opened Mar 13, 2026 by emrunali Loading…
1
3
Add velocyto from bam for cellranger
#530 opened Mar 12, 2026 by agalitsyna Loading…
10 tasks done
1
Increase default runtime limit for cellbender
#505 opened Nov 12, 2025 by aednv Loading…
4 tasks done
STAR: Add support for no/multiple whitelist files enhancement New feature or request
#488 opened Aug 4, 2025 by LeonHafner Contributor Loading…
@LeonHafner
1
SmartSeq - Bugfixes
#486 opened Aug 1, 2025 by sminot Loading…
1 of 5 tasks
6
Add support for using GFF instead of GTF enhancement New feature or request
#451 opened Mar 21, 2025 by milos7250 Contributor Loading…
8 of 11 tasks
@milos7250
2
Added VDJ concatenation modules and added MuData object
#435 opened Feb 27, 2025 by saraterzo Loading…
6 of 11 tasks
4.1.0
29
Altos auto detection chemistry modules
#391 opened Nov 4, 2024 by wzheng0520 • Draft
11 tasks
4.1.0
4
ProTip! What’s not been updated in a month: updated:<2026-04-15.