#
adna
Here are 8 public repositories matching this topic...
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
genome-assembly adna natural-products biosynthetic-gene-clusters ancient-dna paleolithic dental-calculus metagenome-binning genome-reconstruction chlorobium paleobiotechnology paleofuran heterologous-gene-expression
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Apr 22, 2024 - Python
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
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Dec 9, 2025 - Python
A realistic-ish aDNA simulator
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Jul 11, 2025 - Python
A Snakemake-based pipeline for processing and quality-controlling ancient DNA data, including contamination assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
bioinformatics snakemake pipeline genomics genome bioinformatics-pipeline multiqc fasta bam fastq adna dna-sequencing genome-mapping ancientdna ancient-dna short-reads raw-reads ancient-dna-analysis short-read-mapping
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May 15, 2026 - Python
Pipeline for generation of fasta unique capture-probes from a set of genomes
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Nov 28, 2023 - Python
Prioritization of samples prior to prepare adna sequencing libraries
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Mar 26, 2026 - Python
A Python tool to create, manage, and filter by cross-mappability tracks.
bioinformatics taxonomy metagenomics edna contamination ancient-dna-sequences filtration adna mappability ancient-dna-fragments cross-mappability
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Apr 30, 2026 - Python
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