Snakemake workflow for calling NUMTs from Long read sequencing data. The pipeline takes either FASTQ or BAM file and outputs a text file containing NUMTs.
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Updated
May 7, 2026 - Shell
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mitochondria
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Amplification-free ONT pipeline for single-molecule mtDNA variant calling and deletion quantification. SLURM/HPC workflows: basecalling, demultiplexing, modification detection, haplogroup inference, HTML reports.
bioinformatics nanopore hpc slurm oxford-nanopore mitochondria heteroplasmy structural-variants long-read-sequencing
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Mar 30, 2026 - Shell
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
ggplot2 bioinformatics snps scripts awk temperature bioinformatics-pipeline samtools bwa-mem bash-scripting snvs awk-script mutect2 mitochondria mitochondrial-variants mitochondrial-genomes
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Updated
Oct 2, 2022 - Shell
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