pseudobulking on an AnnData object
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Mar 14, 2025 - Python
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pseudobulk
Here are 5 public repositories matching this topic...
Automated pipeline for psuedobulk analysis and downstream unsupervised analysis based on seurat v5
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Apr 15, 2025 - R
Snakemake pipeline for scATAC-seq pseudobulk replicate creation
bioinformatics snakemake pipeline genomics epigenetics atac-seq bam single-cell scatac-seq pseudobulk sinto
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Aug 29, 2025 - Python
Code for the paper: Integrative Multi-Modal Analysis Prioritizes Quantitative Neuropathology for Predicting Cognitive Status in Alzheimer's Disease
machine-learning differential-expression spatial-transcriptomics alzheimer-s-disease merfish snrna-seq pseudobulk neuropathology
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Oct 9, 2025 - Jupyter Notebook
Scripts and data for used in the TE Aging Manuscript
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Sep 23, 2025 - R
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