A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

A vocabulary for describing Zebrafish Phenotypes

Software for performing offline tracking of zebrafish larvae.

Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"

Napari plugin for spatial RNA quantification

Modelling the larval zebrafish field of view for illustration purposes

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Zebrafish embryo fluorescence quantification

A simple tool for zebrafish brain visualization.

CV Zebrafish — a modular software tool to track and analyze zebrafish movements from high-speed imaging. It integrates with DeepLabCut outputs to compute metrics like fin angles, movement timing, speed, and behavior classification

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Set of functions, scripts and notebooks used in the brain-wide auditory processing project

Software for analyis of zebrafish embryo sponaneous tail contractions and photomotor response

Computing functional maps in zebrafish brain

Zebrafish project for Champalimaud Research

Analysis of 16S rRNA and in vitro data from larval zebrafish with loperamide treatment

Open-source desktop application for standardised OECD TG 236 zebrafish embryo toxicity (FET) assays — experimental design, daily well scoring, LC50/NOEC/LOEC analysis, and automated Word report generation.